| Species |
Num Motifs |
Total Direct |
Total Inferred |
Total TFs |
Pct TFs |
Species Name |
Kingdom |
|---|
| Hemiselmis_andersenii | 1 | 0 | 1 | 5 | 20.0 | Nucleomorph (remnant of an algal sybiont) | Alga |
| Volvox_carteri | 24 | 0 | 24 | 215 | 11.2 | Volvox | Alga |
| Guillardia_theta | 21 | 0 | 21 | 735 | 2.9 | Cryptomonad | Alga |
| Emiliania_huxleyi | 14 | 0 | 14 | 547 | 2.6 | EHUX | Alga |
| Phytophthora_ramorum | 24 | 9 | 15 | 250 | 9.6 | Sudden Oak Death | Alga |
| Phytophthora_infestans | 28 | 0 | 28 | 247 | 11.3 | Potato blight water mold | Alga |
| Phytophthora_kernoviae | 16 | 0 | 16 | 167 | 9.6 | Infects European beech and Rhododendron ponticum | Alga |
| Bigelowiella_natans | 14 | 0 | 14 | 312 | 4.5 | Chlorarachniophyte | Alga |
| Phytophthora_lateralis | 13 | 0 | 13 | 194 | 6.7 | Causes cedar root disease | Alga |
| Phytophthora_parasitica | 27 | 0 | 27 | 385 | 7.0 | Black shank - infects tobacco, onion, and strawberries | Alga |
| Aureococcus_anophagefferens | 9 | 0 | 9 | 150 | 6.0 | Brown tide blooms | Alga |
| Ostreococcus_RCC809 | 29 | 0 | 29 | 123 | 23.6 | Single-celled alga | Alga |
| Pythium_vexans | 20 | 0 | 20 | 207 | 9.7 | Water mold - infects citruses | Alga |
| Pythium_aphanidermatum | 21 | 0 | 21 | 234 | 9.0 | Water mold - plant pathogen | Alga |
| Micromonas_sp_RCC299 | 37 | 0 | 37 | 174 | 21.3 | Photosynthetic picophytoplankton | Alga |
| Micromonas_pusilla | 31 | 0 | 31 | 170 | 18.2 | Flagellar marine algae | Alga |
| Phytophthora_sojae | 23 | 0 | 23 | 321 | 7.2 | Soybean stem and root rot | Alga |
| Pythium_ultimum | 18 | 0 | 18 | 268 | 6.7 | Water mold - causes root rot diseases | Alga |
| Ostreococcus_tauri | 45 | 28 | 17 | 118 | 38.1 | Green algae | Alga |
| Pythium_arrhenomanes | 20 | 0 | 20 | 245 | 8.2 | Water mold - plant pathogen | Alga |
| Thalassiosira_pseudonana | 19 | 1 | 18 | 284 | 6.7 | Marine diatom | Alga |
| Chlorella_NC64A | 17 | 0 | 17 | 183 | 9.3 | Microalgae | Alga |
| Chroomonas_mesostigmatica | 1 | 0 | 1 | 5 | 20.0 | Cryptophyte alga | Alga |
| Fragilariopsis_cylindrus | 16 | 0 | 16 | 253 | 6.3 | Planktonic diatom, grows on ice | Alga |
| Phaeodactylum_tricornutum | 21 | 0 | 21 | 220 | 9.5 | Diatom | Alga |
| Chlorella_vulgaris | 21 | 1 | 20 | 161 | 13.0 | Green algae | Alga |
| Hyaloperonospora_arabidopsidis | 17 | 0 | 17 | 155 | 11.0 | Causes downy mildew of Arabidopsis thaliana | Alga |
| Coccomyxa_subellipsoidea_C169 | 24 | 0 | 24 | 173 | 13.9 | Green microalga | Alga |
| Albugo_laibachii | 12 | 0 | 12 | 218 | 5.5 | Water mold - pathogen of Arabidopsis thaliana | Alga |
| Pythium_irregulare | 25 | 0 | 25 | 251 | 10.0 | Water mold - plant pathogen | Alga |
| Pythium_iwayamai | 17 | 0 | 17 | 208 | 8.2 | Water mold - causes snow-rot disease of cereal plants | Alga |
| Galerina_marginata | 50 | 0 | 50 | 270 | 18.5 | Poisonous "little brown mushroom" | Fungi |
| Fusarium_oxysporum | 130 | 0 | 130 | 627 | 20.7 | Soil microbe digesting lignin | Fungi |
| Fusarium_solani | 122 | 0 | 122 | 705 | 17.3 | Filamentous fungus | Fungi |
| Fusarium_verticillioides | 100 | 0 | 100 | 404 | 24.8 | Gibberella fujikuroi, cause of bakanae disease in rice | Fungi |
| Gaeumannomyces_graminis | 116 | 0 | 116 | 320 | 36.2 | Causes black spots on rice | Fungi |
| Fusarium_pseudograminearum | 116 | 0 | 116 | 460 | 25.2 | Causes crown rot of wheat | Fungi |
| Hydnomerulius_pinastri | 16 | 0 | 16 | 99 | 16.2 | Fungus | Fungi |
| Fusarium_graminearum | 127 | 18 | 109 | 538 | 23.6 | Gibberella zeae, cause of wheat headblight | Fungi |
| Pseudozyma_flocculosa | 22 | 0 | 22 | 139 | 15.8 | Powdery mildew antagonist | Fungi |
| Pseudozyma_antarctica | 19 | 0 | 19 | 155 | 12.3 | Potentially useful for production of functional glycolipids | Fungi |
| Pseudogymnoascus_pannorum | 78 | 0 | 78 | 345 | 22.6 | Soil-dwelling fungu implicated in the human disease geomycosis | Fungi |
| Pseudogymnoascus_destructans | 88 | 0 | 88 | 218 | 40.4 | Cause of white-nose syndrome in bats | Fungi |
| Hebeloma_cylindrosporum | 48 | 0 | 48 | 237 | 20.3 | Mushroom | Fungi |
| Pseudocercospora_fijiensis | 73 | 0 | 73 | 285 | 25.6 | Cause of leaf-spot disease of banana plants | Fungi |
| Heterobasidion_annosum | 33 | 0 | 33 | 218 | 15.1 | Annosum root rot | Fungi |
| Heterobasidion_irregulare | 35 | 0 | 35 | 253 | 13.8 | Tree root rotting pathogenic fungus | Fungi |
| Postia_placenta | 24 | 0 | 24 | 227 | 10.6 | Brown rot fungus | Fungi |
| Histoplasma_capsulatum | 86 | 12 | 74 | 218 | 39.4 | Histoplasma capsulatum | Fungi |
| Pseudozyma_aphidis | 22 | 0 | 22 | 184 | 12.0 | Environmental Basidiomycete yeast - occasionally infects humans | Fungi |
| Gymnopus_luxurians | 23 | 0 | 23 | 209 | 11.0 | Mushroom that grows in wood chips | Fungi |
| Grosmannia_clavigera | 91 | 0 | 91 | 277 | 32.9 | Blue stain fungus | Fungi |
| Pyrenophora_triticirepentis | 78 | 0 | 78 | 260 | 30.0 | Fungus | Fungi |
| Pyrenophora_teres | 93 | 0 | 93 | 295 | 31.5 | Fungal pathogen of barley | Fungi |
| Punctularia_strigosozonata | 2 | 0 | 2 | 26 | 7.7 | Fungus | Fungi |
| Puccinia_triticina | 21 | 0 | 21 | 154 | 13.6 | Wheat leaf rust | Fungi |
| Glarea_lozoyensis | 32 | 0 | 32 | 86 | 37.2 | Fungus - overproducer of pneumocandin | Fungi |
| Puccinia_graminis | 29 | 8 | 21 | 193 | 15.0 | Stem rust | Fungi |
| Gloeophyllum_trabeum | 38 | 0 | 38 | 216 | 17.6 | Brown rot fungus | Fungi |
| Pseudozyma_hubeiensis | 26 | 0 | 26 | 213 | 12.2 | Yeast | Fungi |
| Pseudozyma_brasiliensis | 22 | 0 | 22 | 157 | 14.0 | Yeast | Fungi |
| Podospora_anserina | 107 | 0 | 107 | 295 | 36.3 | Filamentous fungus | Fungi |
| Schizosaccharomyces_octosporus | 27 | 0 | 27 | 102 | 26.5 | Fission yeast | Fungi |
| Saccharomyces_cerevisiae | 219 | 216 | 3 | 239 | 91.6 | Bakers yeast | Fungi |
| Saccharomyces_castellii | 82 | 2 | 80 | 175 | 46.9 | S. castellii | Fungi |
| Saccharomyces_bayanus | 137 | 0 | 137 | 176 | 77.8 | S. bayanus (yeast) | Fungi |
| Saccharomyces_arboricola | 100 | 0 | 100 | 115 | 87.0 | Yeast that grows in tree bark | Fungi |
| Edhazardia_aedis | 15 | 0 | 15 | 52 | 28.8 | Polymorphic microsporidium of mosquitoes | Fungi |
| Rozella_allomycis | 14 | 0 | 14 | 95 | 14.7 | One of the earliest diverging lineages of fungi | Fungi |
| Rhodotorula_glutinis | 10 | 0 | 10 | 87 | 11.5 | Pigmented yeast - infects human bloodstream | Fungi |
| Encephalitozoon_cuniculi | 8 | 3 | 5 | 39 | 20.5 | Encephalitozoon cuniculi | Fungi |
| Encephalitozoon_hellem | 7 | 0 | 7 | 41 | 17.1 | Microsporidian | Fungi |
| Saccharomyces_mikatae | 162 | 0 | 162 | 197 | 82.2 | S. mikatae (yeast) | Fungi |
| Saccharomyces_paradoxus | 166 | 0 | 166 | 204 | 81.4 | S. paradoxus (yeast) | Fungi |
| Schizosaccharomyces_japonicus | 22 | 0 | 22 | 103 | 21.4 | Fission yeast | Fungi |
| Schizosaccharomyces_cryophilus | 28 | 0 | 28 | 101 | 27.7 | Fission yeast | Fungi |
| Schizophyllum_commune | 56 | 13 | 43 | 311 | 18.0 | Split Gill | Fungi |
| Dothistroma_septosporum | 82 | 0 | 82 | 313 | 26.2 | Cause of red band needle blight | Fungi |
| Drechslerella_stenobrocha | 56 | 0 | 56 | 148 | 37.8 | Constricting-ring-forming fungus | Fungi |
| Scheffersomyces_stipitis | 47 | 0 | 47 | 208 | 22.6 | Yeast researched for its potential in renewable fuels | Fungi |
| Scedosporium_apiospermum | 85 | 0 | 85 | 254 | 33.5 | Fungus found in stagnant water that infects immunocompromised humans | Fungi |
| Coccidioides_posadasii | 87 | 0 | 87 | 225 | 38.7 | Cause of Valley Fever | Fungi |
| Saccharomycetaceae_sp_ashbya_aceri | 63 | 0 | 63 | 152 | 41.4 | Yeast | Fungi |
| Encephalitozoon_intestinalis | 8 | 0 | 8 | 39 | 20.5 | Protist (human parasite); smallest known genome | Fungi |
| Encephalitozoon_romaleae | 7 | 0 | 7 | 41 | 17.1 | Microsporidian | Fungi |
| Endocarpon_pusillum | 69 | 0 | 69 | 202 | 34.2 | Lichen-forming fungus | Fungi |
| Exophiala_mesophila | 80 | 0 | 80 | 448 | 17.9 | Alkylbenzene-degrading black yeast | Fungi |
| Exophiala_oligosperma | 87 | 0 | 87 | 666 | 13.1 | Black yeast pathogenic to humans | Fungi |
| Exophiala_sideris | 80 | 0 | 80 | 504 | 15.9 | Black yeast isolated from environments polluted with toxic alkyl benze | Fungi |
| Exophiala_spinifera | 84 | 0 | 84 | 495 | 17.0 | Black yeast | Fungi |
| Exophiala_xenobiotica | 90 | 0 | 90 | 539 | 16.7 | Black yeast | Fungi |
| Fibroporia_radiculosa | 31 | 0 | 31 | 152 | 20.4 | Copper-tolerant fungus that causes brown rot decay of wood | Fungi |
| Saccharomyces_kudriavzevii | 102 | 0 | 102 | 122 | 83.6 | Yeast found in wine and beer | Fungi |
| Fomitopsis_pinicola | 42 | 0 | 42 | 258 | 16.3 | Red-belt conk mushroom | Fungi |
| Fonsecaea_pedrosoi | 85 | 0 | 85 | 497 | 17.1 | Major causative agent of chromoblastomycosis | Fungi |
| Exophiala_dermatitidis | 85 | 0 | 85 | 347 | 24.5 | Thermophilic black yeast | Fungi |
| Exophiala_aquamarina | 82 | 0 | 82 | 415 | 19.8 | Anamorphic fungus hosted by fish | Fungi |
| Rhodosporidium_toruloides | 25 | 0 | 25 | 235 | 10.6 | Yeast - linked to bovine mastitis | Fungi |
| Rhizopus_oryzae | 140 | 12 | 128 | 554 | 25.3 | Rhizopus oryzae | Fungi |
| Rhizophagus_irregularis | 75 | 0 | 75 | 687 | 10.9 | Fungi that play vital functions in the phosphorus cycle | Fungi |
| Enterocytozoon_bieneusi | 4 | 0 | 4 | 37 | 10.8 | Microsporidia | Fungi |
| Rhizoctonia_solani | 31 | 0 | 31 | 281 | 11.0 | Plant pathogen - cause of collar rot, root rot, damping off and wire s | Fungi |
| Rhinocladiella_mackenziei | 85 | 0 | 85 | 405 | 21.0 | Potential agent of cerebral phaeohyphomycosis | Fungi |
| Eremothecium_cymbalariae | 65 | 0 | 65 | 148 | 43.9 | Close relative of Ashbya gossypii | Fungi |
| Erysiphe_necator | 61 | 0 | 61 | 140 | 43.6 | Causes powdery mildew of grape | Fungi |
| Eutypa_lata | 45 | 0 | 45 | 148 | 30.4 | Causes dead arm of grapevine | Fungi |
| Fusarium_fujikuroi | 126 | 0 | 126 | 725 | 17.4 | Causes bakanae in rice | Fungi |
| Penicillium_italicum | 99 | 0 | 99 | 288 | 34.4 | Post harvest disease commonly associated with citrus fruits | Fungi |
| Paxillus_rubicundulus | 44 | 0 | 44 | 241 | 18.3 | Brown mushroom | Fungi |
| Microsporidia_sp | 11 | 0 | 11 | 43 | 25.6 | Spore-forming unicellular parasites | Fungi |
| Microsporum_canis | 88 | 0 | 88 | 265 | 33.2 | Cause of Tinea capitis (scalp ringworm) | Fungi |
| Microsporum_gypseum | 86 | 0 | 86 | 247 | 34.8 | Mold, may cause ringworm | Fungi |
| Millerozyma_farinosa | 92 | 0 | 92 | 373 | 24.7 | Ascomycete yeast | Fungi |
| Paxillus_involutus | 17 | 0 | 17 | 115 | 14.8 | Brown roll-rim mushroom | Fungi |
| Mixia_osmundae | 24 | 0 | 24 | 143 | 16.8 | Fungus | Fungi |
| Moniliophthora_perniciosa | 6 | 0 | 6 | 85 | 7.1 | Plant pathogen | Fungi |
| Moniliophthora_roreri | 55 | 0 | 55 | 367 | 15.0 | Fungus - causes frosty pod rot disease of cacao | Fungi |
| Microbotryum_violaceum | 23 | 0 | 23 | 188 | 12.2 | Anther smut fungus | Fungi |
| Meyerozyma_guilliermondii | 41 | 0 | 41 | 216 | 19.0 | Fungus | Fungi |
| Metarhizium_robertsii | 113 | 0 | 113 | 473 | 23.9 | Fungus - infects cockroaches | Fungi |
| Penicillium_expansum | 94 | 0 | 94 | 316 | 29.7 | Post harvest rot that infects apples | Fungi |
| Penicillium_digitatum | 91 | 0 | 91 | 244 | 37.3 | Common postharvest fungus disease of citrus called green mold | Fungi |
| Penicillium_chrysogenum | 114 | 0 | 114 | 572 | 19.9 | Mold | Fungi |
| Metarhizium_acridum | 84 | 0 | 84 | 276 | 30.4 | Fungus - pathogenic to locusts | Fungi |
| Metarhizium_album | 81 | 0 | 81 | 236 | 34.3 | Fungus - pathogenic to leafhoppers | Fungi |
| Metarhizium_anisopliae | 87 | 0 | 87 | 310 | 28.1 | Fungus - parasitic to many insects | Fungi |
| Metarhizium_brunneum | 98 | 0 | 98 | 340 | 28.8 | Mitosporic fungus | Fungi |
| Metarhizium_guizhouense | 103 | 0 | 103 | 415 | 24.8 | Fungus | Fungi |
| Metarhizium_majus | 98 | 0 | 98 | 344 | 28.5 | Fungus - virulent against beetles | Fungi |
| Mucor_circinelloides | 122 | 0 | 122 | 466 | 26.2 | Cause of zygomycosis | Fungi |
| Paracoccidioides_sp_lutzii | 77 | 0 | 77 | 205 | 37.6 | Dimorphic ascomycete fungus | Fungi |
| Neurospora_discreta | 145 | 0 | 145 | 254 | 57.1 | Mold | Fungi |
| Neurospora_tetrasperma | 153 | 1 | 152 | 264 | 58.0 | Mold | Fungi |
| Ordospora_colligata | 5 | 0 | 5 | 33 | 15.2 | Microsporidian - gut parasite of the microcrustacean Daphnia sp. | Fungi |
| Nosema_apis | 10 | 0 | 10 | 39 | 25.6 | Microsporidian that affects honeybees | Fungi |
| Nosema_bombycis | 12 | 0 | 12 | 77 | 15.6 | Microsporidian that affects silkworms | Fungi |
| Nosema_ceranae | 8 | 0 | 8 | 35 | 22.9 | Microsporidian that affects bees | Fungi |
| Ophiostoma_piceae_uamh | 109 | 0 | 109 | 353 | 30.9 | Wood-staining fungus | Fungi |
| Ogataea_parapolymorpha | 36 | 0 | 36 | 184 | 19.6 | Yeast that can grow on methanol | Fungi |
| Oidiodendron_maius | 112 | 0 | 112 | 726 | 15.4 | Fungus that associates with shrub roots | Fungi |
| Neurospora_crassa | 170 | 156 | 14 | 290 | 58.6 | Red bread mold | Fungi |
| Neosartorya_fischeri | 110 | 0 | 110 | 367 | 30.0 | Fungal pathogen (related to Aspergillus) | Fungi |
| Neofusicoccum_parvum | 68 | 0 | 68 | 220 | 30.9 | Sac fungus | Fungi |
| Paracoccidioides_brasiliensis | 84 | 0 | 84 | 207 | 40.6 | Cause of paracoccidioidomycosis | Fungi |
| Myceliophthora_thermophila | 107 | 0 | 107 | 264 | 40.5 | Thielavia heterothallica | Fungi |
| Mycosphaerella_fijiensis | 70 | 0 | 70 | 244 | 28.7 | Black sigatoka | Fungi |
| Mycosphaerella_graminicola | 77 | 1 | 76 | 233 | 33.0 | Wheat pathogen | Fungi |
| Naumovozyma_castellii | 91 | 0 | 91 | 210 | 43.3 | Yeast | Fungi |
| Naumovozyma_dairenensis | 91 | 0 | 91 | 192 | 47.4 | Yeast | Fungi |
| Nectria_haematococca | 122 | 1 | 121 | 707 | 17.3 | Fusarium solani | Fungi |
| Nematocida_parisii_ertm1 | 8 | 0 | 8 | 38 | 21.1 | Pathogen of nematodes | Fungi |
| Nematocida_sp | 6 | 0 | 6 | 35 | 17.1 | Nematocida | Fungi |
| Ophiocordyceps_sinensis | 62 | 0 | 62 | 150 | 41.3 | Fungus that parasitizes larvae of ghost moths | Fungi |
| Pneumocystis_murina | 21 | 0 | 21 | 63 | 33.3 | Fungus, first isolated from lab mice | Fungi |
| Kuraishia_capsulata | 47 | 0 | 47 | 222 | 21.2 | Budding yeast | Fungi |
| Laccaria_amethystina | 48 | 0 | 48 | 292 | 16.4 | Amethyst deceiver (mushroom) | Fungi |
| Laccaria_bicolor | 43 | 0 | 43 | 260 | 16.5 | Deceiver (small tan colored mushroom) | Fungi |
| Lachancea_kluyveri | 72 | 0 | 72 | 185 | 38.9 | L. kluyveri (budding yeast) | Fungi |
| Lachancea_lanzarotensis | 59 | 0 | 59 | 160 | 36.9 | Grape yeast | Fungi |
| Lachancea_thermotolerans | 71 | 0 | 71 | 168 | 42.3 | Grape yeast | Fungi |
| Pisolithus_tinctorius | 45 | 0 | 45 | 274 | 16.4 | Fungus - symbiotic with trees | Fungi |
| Pisolithus_microcarpus | 41 | 0 | 41 | 280 | 14.6 | Fungus - symbiotic with trees | Fungi |
| Piriformospora_indica | 22 | 0 | 22 | 206 | 10.7 | Endophytic root-colonizing fungus | Fungi |
| Komagataella_pastoris | 45 | 0 | 45 | 163 | 27.6 | Methylotrophic yeast | Fungi |
| Kluyveromyces_waltii | 59 | 0 | 59 | 154 | 38.3 | K. waltii (yeast) | Fungi |
| Kluyveromyces_thermotolerans | 71 | 0 | 71 | 168 | 42.3 | K. thermotolerans | Fungi |
| Pneumocystis_carinii | 41 | 0 | 41 | 130 | 31.5 | Form of pneumonia | Fungi |
| Plicaturopsis_crispa | 7 | 0 | 7 | 45 | 15.6 | Fungus | Fungi |
| Pleurotus_ostreatus | 44 | 0 | 44 | 235 | 18.7 | Oyster mushroom | Fungi |
| Pleurotus_djamor | 1 | 1 | 0 | 1 | 100.0 | Pink oyster mushroom | Fungi |
| Jaapia_argillacea | 48 | 0 | 48 | 279 | 17.2 | Jaapia argillacea | Fungi |
| Kazachstania_africana | 99 | 0 | 99 | 198 | 50.0 | Ascomycete yeast | Fungi |
| Kazachstania_naganishii | 82 | 0 | 82 | 193 | 42.5 | Ascomycete yeast | Fungi |
| Kluyveromyces_delphensis | 1 | 1 | 0 | 1 | 100.0 | Kluyveromyces delphensis | Fungi |
| Kluyveromyces_lactis | 56 | 5 | 51 | 170 | 32.9 | Yeast | Fungi |
| Piloderma_croceum | 36 | 0 | 36 | 256 | 14.1 | Fungus | Fungi |
| Pichia_stipitis | 47 | 0 | 47 | 209 | 22.5 | Yeast related to cerevisiae | Fungi |
| Magnaporthe_poae | 98 | 0 | 98 | 262 | 37.4 | Fungus - cause of summer patch (turfgrass disease) | Fungi |
| Malassezia_globosa | 12 | 0 | 12 | 75 | 16.0 | Yeast (human symbiont) | Fungi |
| Malassezia_sympodialis | 7 | 0 | 7 | 49 | 14.3 | Fungal pathogen - cause of atopic eczema and granulomatous dermatitis | Fungi |
| Pestalotiopsis_fici | 114 | 0 | 114 | 490 | 23.3 | Pathogen of Ficus carica | Fungi |
| Penicillium_solitum | 107 | 0 | 107 | 395 | 27.1 | Mesophilic fungus present in marine sediments from Antarctica | Fungi |
| Marssonina_brunnea | 93 | 0 | 93 | 251 | 37.1 | Fungal pathogen - cause of Marssonina leaf spot | Fungi |
| Penicillium_rubens | 114 | 0 | 114 | 572 | 19.9 | Source of Penicillin | Fungi |
| Penicillium_oxalicum | 112 | 0 | 112 | 360 | 31.1 | Penicillium oxalicum | Fungi |
| Penicillium_marneffei | 101 | 0 | 101 | 457 | 22.1 | Mold- cause of penicilliosis | Fungi |
| Magnaporthe_oryzae | 110 | 0 | 110 | 328 | 33.5 | Magnaporthe grisea, rice blast fungus, many others | Fungi |
| Macrophomina_phaseolina | 85 | 0 | 85 | 297 | 28.6 | Fungal pathogen - cause of charcoal rot on many plants | Fungi |
| Phaeosphaeria_nodorum | 65 | 2 | 63 | 228 | 28.5 | Glume blotch fungus | Fungi |
| Pichia_pastoris | 45 | 0 | 45 | 163 | 27.6 | Yeast | Fungi |
| Pichia_kudriavzevii | 27 | 0 | 27 | 178 | 15.2 | Yeast | Fungi |
| Pichia_angusta | 1 | 1 | 0 | 1 | 100.0 | Pichia angusta (yeast) | Fungi |
| Leptosphaeria_maculans | 80 | 0 | 80 | 262 | 30.5 | Fungal pathogen - cause of blackleg disease on Brassica | Fungi |
| Lodderomyces_elongisporus | 41 | 0 | 41 | 168 | 24.4 | Yeast | Fungi |
| Phycomyces_blakesleeanus | 105 | 0 | 105 | 544 | 19.3 | Algal fungi | Fungi |
| Phlebiopsis_gigantea | 41 | 0 | 41 | 228 | 18.0 | Fungus that causes white rot of conifer logs and stumps | Fungi |
| Phanerochaete_chrysosporium | 30 | 0 | 30 | 170 | 17.6 | "White rot", crust fungus | Fungi |
| Phanerochaete_carnosa | 29 | 0 | 29 | 208 | 13.9 | Plant pathogen infecting plane trees | Fungi |
| Melampsora_laricipopulina | 23 | 0 | 23 | 215 | 10.7 | Cause of poplar rust | Fungi |
| Dichomitus_squalens | 15 | 0 | 15 | 110 | 13.6 | Western red rot | Fungi |
| Capronia_coronata | 93 | 0 | 93 | 323 | 28.8 | Black yeast | Fungi |
| Ustilago_maydis | 22 | 2 | 20 | 202 | 10.9 | Corn smut | Fungi |
| Talaromyces_marneffei | 101 | 0 | 101 | 458 | 22.1 | Infects humans and causes fever, weight loss and malaise | Fungi |
| Ustilago_hordei | 25 | 0 | 25 | 195 | 12.8 | Cause of covered smut of barley | Fungi |
| Talaromyces_stipitatus | 104 | 0 | 104 | 635 | 16.4 | Non-pathogenic filamentous fungus | Fungi |
| Ustilaginoidea_virens | 86 | 0 | 86 | 220 | 39.1 | Plant pathogen that causes False Smut of rice | Fungi |
| Uncinocarpus_reesii | 63 | 0 | 63 | 182 | 34.6 | Related to Coccidioides, the cause of Coccidiomycosis | Fungi |
| Brettanomyces_bruxellensis | 14 | 0 | 14 | 66 | 21.2 | Yeast - used in Belgian beers | Fungi |
| Tetrapisispora_blattae | 79 | 0 | 79 | 190 | 41.6 | Tetrapisispora blattae | Fungi |
| Tetrapisispora_phaffii | 71 | 0 | 71 | 164 | 43.3 | Tetrapisispora phaffii | Fungi |
| Tulasnella_calospora | 34 | 0 | 34 | 258 | 13.2 | Tulasnella calospora | Fungi |
| Botrytis_cinerea | 105 | 1 | 104 | 397 | 26.4 | Botrytis cinerea | Fungi |
| Botryobasidium_botryosum | 29 | 0 | 29 | 364 | 8.0 | Botryobasidium botryosum | Fungi |
| Thielavia_terrestris | 113 | 0 | 113 | 289 | 39.1 | Thermophilic fungus related to Nerospora | Fungi |
| Tilletiaria_anomala | 16 | 0 | 16 | 160 | 10.0 | Fungus found in decayed wood | Fungi |
| Togninia_minima | 52 | 0 | 52 | 131 | 39.7 | Togninia minima | Fungi |
| Zymoseptoria_tritici | 77 | 0 | 77 | 236 | 32.6 | Cause of septoria tritici blotch in wheat | Fungi |
| Blastomyces_dermatitidis | 87 | 0 | 87 | 236 | 36.9 | Causes blastomycosis | Fungi |
| Byssochlamys_spectabilis | 92 | 0 | 92 | 314 | 29.3 | Common environmental mold | Fungi |
| Vanderwaltozyma_polyspora | 80 | 0 | 80 | 170 | 47.1 | Yeast: post-WGD lineage most divergent from cerevisiae | Fungi |
| Vavraia_culicis | 5 | 0 | 5 | 41 | 12.2 | Microsporidian parasite of mosquitoes | Fungi |
| Vittaforma_corneae | 5 | 0 | 5 | 37 | 13.5 | Human-infecting microsporidian | Fungi |
| Candida_tropicalis | 51 | 0 | 51 | 193 | 26.4 | Yeast | Fungi |
| Candida_tenuis | 41 | 0 | 41 | 199 | 20.6 | Yeast | Fungi |
| Candida_parapsilosis | 44 | 0 | 44 | 180 | 24.4 | Yeast | Fungi |
| Candida_orthopsilosis | 48 | 0 | 48 | 188 | 25.5 | Yeast | Fungi |
| Candida_maltosa | 49 | 0 | 49 | 201 | 24.4 | Yeast | Fungi |
| Candida_lusitaniae | 36 | 0 | 36 | 175 | 20.6 | Yeast | Fungi |
| Candida_guilliermondii | 41 | 0 | 41 | 216 | 19.0 | Yeast | Fungi |
| Candida_glabrata | 81 | 7 | 74 | 176 | 46.0 | Human pathogen (fungus) | Fungi |
| Candida_dubliniensis | 49 | 0 | 49 | 208 | 23.6 | Fungal pathogen | Fungi |
| Candida_albicans | 104 | 14 | 90 | 375 | 27.7 | Yeast | Fungi |
| Suillus_luteus | 44 | 0 | 44 | 260 | 16.9 | Slippery Jack mushroom | Fungi |
| Verticillium_dahliae | 105 | 0 | 105 | 346 | 30.3 | Causes verticillium wilt | Fungi |
| Verticillium_alfalfae | 79 | 0 | 79 | 290 | 27.2 | Causes verticillium wilt in some plant species | Fungi |
| Verticillium_albo_atrum | 79 | 0 | 79 | 289 | 27.3 | Plant pathogen targeting: hops, alfalfa, cotton | Fungi |
| Anncaliia_algerae | 12 | 0 | 12 | 74 | 16.2 | Aquatic microsporidium that infects mosquitoes | Fungi |
| Verruconis_gallopava | 83 | 0 | 83 | 358 | 23.2 | Mold causing saprophytic infection in immunosuppressed hosts | Fungi |
| Bipolaris_zeicola | 91 | 0 | 91 | 368 | 24.7 | Bipolaris zeicola | Fungi |
| Bipolaris_victoriae | 93 | 0 | 93 | 383 | 24.3 | Fungal plant pathogen - cause of victoria blight | Fungi |
| Aspergillus_fumigatus | 102 | 0 | 102 | 369 | 27.6 | Cause of aspergillosis | Fungi |
| Aspergillus_flavus | 108 | 0 | 108 | 444 | 24.3 | Aspergillus | Fungi |
| Aspergillus_clavatus | 108 | 0 | 108 | 335 | 32.2 | Aspergillus | Fungi |
| Aspergillus_carbonarius | 115 | 0 | 115 | 423 | 27.2 | Black spore mold | Fungi |
| Ashbya_gossypii | 64 | 1 | 63 | 162 | 39.5 | Plant pathogen (fungus) | Fungi |
| Trichosporon_asahii | 13 | 0 | 13 | 165 | 7.9 | Fungal pathogen found in immunologically compromised patients | Fungi |
| Arthroderma_otae | 75 | 0 | 75 | 224 | 33.5 | Zoophilic dermatophyte fungus | Fungi |
| Arthroderma_benhamiae | 64 | 0 | 64 | 163 | 39.3 | Ringworm | Fungi |
| Arthrobotrys_oligospora | 72 | 0 | 72 | 255 | 28.2 | Predacious fungus of nematodes | Fungi |
| Trichoderma_atroviride | 105 | 0 | 105 | 466 | 22.5 | Cold tollerant, hyperparasite | Fungi |
| Trichoderma_reesei | 97 | 0 | 97 | 337 | 28.8 | Hypocrea jecorina | Fungi |
| Trichoderma_virens | 104 | 0 | 104 | 508 | 20.5 | Plant beneficial fungus | Fungi |
| Trichophyton_equinum | 75 | 0 | 75 | 225 | 33.3 | Horse ringworm | Fungi |
| Trichophyton_interdigitale | 82 | 0 | 82 | 236 | 34.7 | Source of penicillin | Fungi |
| Trichophyton_rubrum | 82 | 0 | 82 | 219 | 37.4 | Athletes foot, jock itch, ringworm | Fungi |
| Trichophyton_soudanense | 81 | 0 | 81 | 220 | 36.8 | Common cause of tinea capitis | Fungi |
| Trichophyton_verrucosum | 62 | 0 | 62 | 148 | 41.9 | Cow ringworm | Fungi |
| Aspergillus_nidulans | 194 | 120 | 74 | 495 | 39.2 | Aspergillus | Fungi |
| Aspergillus_niger | 111 | 0 | 111 | 475 | 23.4 | Aspergillus (black mold) | Fungi |
| Aspergillus_oryzae | 91 | 1 | 90 | 316 | 28.8 | Koji mold (makes sake) | Fungi |
| Bipolaris_sorokiniana | 96 | 0 | 96 | 397 | 24.2 | Cause of several cereal diseases | Fungi |
| Bipolaris_oryzae | 94 | 0 | 94 | 365 | 25.8 | Cause of rice brown spot disease | Fungi |
| Bipolaris_maydis | 89 | 0 | 89 | 381 | 23.4 | Southern corn leaf blight | Fungi |
| Torrubiella_hemipterigena | 110 | 0 | 110 | 476 | 23.1 | Fungus that lives on insects | Fungi |
| Beauveria_bassiana | 97 | 0 | 97 | 379 | 25.6 | Fungus - cause of white muscardine disease | Fungi |
| Baudoinia_compniacensis | 80 | 0 | 80 | 263 | 30.4 | Whiskey fungus | Fungi |
| Batrachochytrium_dendrobatidis | 17 | 3 | 14 | 140 | 12.1 | Chytrid targetting amphibians | Fungi |
| Torulaspora_delbrueckii | 76 | 0 | 76 | 144 | 52.8 | Ubiquitous yeast species | Fungi |
| Tuber_melanosporum | 79 | 1 | 78 | 186 | 42.5 | Black truffle | Fungi |
| Trachipleistophora_hominis | 5 | 0 | 5 | 38 | 13.2 | Obligate intracellular microsporidian parasite | Fungi |
| Trametes_cinnabarina | 37 | 0 | 37 | 154 | 24.0 | White-rot fungus | Fungi |
| Tremella_mesenterica | 22 | 0 | 22 | 173 | 12.7 | Golden jelly fungus | Fungi |
| Aureobasidium_subglaciale | 91 | 0 | 91 | 360 | 25.3 | Black, yeast-like fungus | Fungi |
| Aureobasidium_pullulans | 91 | 0 | 91 | 385 | 23.6 | Black, yeast-like fungus | Fungi |
| Aureobasidium_melanogenum | 90 | 0 | 90 | 360 | 25.0 | Black, yeast-like fungus | Fungi |
| Aspergillus_terreus | 107 | 3 | 104 | 349 | 30.7 | Aspergillus terreus | Fungi |
| Aspergillus_ruber | 117 | 0 | 117 | 423 | 27.7 | Mold | Fungi |
| Trichophyton_tonsurans | 81 | 0 | 81 | 226 | 35.8 | Cause of Tinea capitis (scalp ringworm) | Fungi |
| Debaryomyces_hansenii | 54 | 0 | 54 | 212 | 25.5 | Salt loving yeast | Fungi |
| Cryptococcus_gattii | 24 | 0 | 24 | 161 | 14.9 | Encapsulated yeast found primarily in tropical and subtropical climate | Fungi |
| Cryphonectria_parasitica | 100 | 0 | 100 | 301 | 33.2 | Chestnut blight fungus | Fungi |
| Sphaerobolus_stellatus | 19 | 0 | 19 | 243 | 7.8 | Cannonball fungus | Fungi |
| Cordyceps_militaris | 83 | 0 | 83 | 321 | 25.9 | Mushroom used in traditional Asian medical practice | Fungi |
| Coprinopsis_scobicola | 1 | 1 | 0 | 1 | 100.0 | Ink cap fungus | Fungi |
| Coprinopsis_cinerea | 58 | 2 | 56 | 235 | 24.7 | Inky cap mushroom | Fungi |
| Coprinellus_disseminatus | 2 | 2 | 0 | 2 | 100.0 | Fairies Bonnets mushroom | Fungi |
| Coniosporium_apollinis | 80 | 0 | 80 | 216 | 37.0 | Rock-inhabiting fungus | Fungi |
| Colletotrichum_sublineola | 114 | 0 | 114 | 394 | 28.9 | Causes anthracnose disease on sorghum | Fungi |
| Colletotrichum_orbiculare | 106 | 0 | 106 | 398 | 26.6 | Plant pathogen of melons and cucumber | Fungi |
| Colletotrichum_higginsianum | 104 | 0 | 104 | 420 | 24.8 | Cause of anthracnose disease on many plants | Fungi |
| Colletotrichum_graminicola | 124 | 0 | 124 | 383 | 32.4 | Glomerella graminicola, causes plant cankers (anthracnose) on maize an | Fungi |
| Colletotrichum_gloeosporioides | 99 | 0 | 99 | 374 | 26.5 | Cause of bitter rot | Fungi |
| Colletotrichum_fioriniae | 116 | 0 | 116 | 460 | 25.2 | Cause of bitter rot | Fungi |
| Agaricus_bisporus | 37 | 0 | 37 | 186 | 19.9 | Common (button) mushroom | Fungi |
| Cochliobolus_heterostrophus_C5 | 83 | 0 | 83 | 259 | 32.0 | Southern Corn Leaf Blight | Fungi |
| Coccidioides_immitis | 89 | 1 | 88 | 263 | 33.8 | Cause of Valley Fever | Fungi |
| Spizellomyces_punctatus | 38 | 0 | 38 | 246 | 15.4 | Fungus with weird mitochondrial genome | Fungi |
| Cryptococcus_neoformans | 27 | 4 | 23 | 188 | 14.4 | Cryptococcus neoformans | Fungi |
| Scleroderma_citrinum | 38 | 0 | 38 | 264 | 14.4 | Pigskin poison puffball | Fungi |
| Blumeria_graminis | 70 | 0 | 70 | 137 | 51.1 | Barley powdery mildew | Fungi |
| Sclerotinia_borealis | 96 | 0 | 96 | 292 | 32.9 | Pathogen infecting barley, rye and wheat | Fungi |
| Zygosaccharomyces_rouxii | 75 | 0 | 75 | 157 | 47.8 | Z. rouxii | Fungi |
| Sclerotinia_sclerotiorum | 65 | 0 | 65 | 267 | 24.3 | Pathogenic fungus, causes fuzzy growths on plants | Fungi |
| Zygosaccharomyces_bailii | 134 | 0 | 134 | 280 | 47.9 | Causes spoilage resulting in huge economic losses to the food industry | Fungi |
| Schizosaccharomyces_pombe | 36 | 12 | 24 | 115 | 31.3 | Fission yeast | Fungi |
| Acremonium_chrysogenum | 109 | 0 | 109 | 316 | 34.5 | Acremonium chrysogenum | Fungi |
| Dactylellina_haptotyla | 73 | 0 | 73 | 236 | 30.9 | Nematode-trapping fungus | Fungi |
| Dacryopinax_sp | 32 | 0 | 32 | 176 | 18.2 | Jelly fungus - causes extensive decay in dead wood | Fungi |
| Cyphellophora_europaea | 74 | 0 | 74 | 366 | 20.2 | Black yeast-like fungus | Fungi |
| Yarrowia_lipolytica | 45 | 0 | 45 | 167 | 26.9 | Yeast | Fungi |
| Serendipita_vermifera | 25 | 0 | 25 | 239 | 10.5 | Jelly fungus | Fungi |
| Serpula_lacrymans | 41 | 0 | 41 | 180 | 22.8 | Fungus (cause of dry rot) | Fungi |
| Setosphaeria_turcica | 84 | 0 | 84 | 364 | 23.1 | Causal agent of Northern Leaf Blight in corn | Fungi |
| Sordaria_macrospora | 144 | 0 | 144 | 267 | 53.9 | Microscopic fungus - model of fruiting body development in Ascomycetes | Fungi |
| Spathaspora_passalidarum | 39 | 0 | 39 | 174 | 22.4 | Yeast with potential in biofuel production | Fungi |
| Sphaerulina_musiva | 81 | 0 | 81 | 273 | 29.7 | Cause of leaf spot and canker disease on poplar trees | Fungi |
| Cladophialophora_psammophila | 76 | 0 | 76 | 381 | 19.9 | Black yeast | Fungi |
| Sporothrix_brasiliensis | 94 | 0 | 94 | 320 | 29.4 | Soil-dwelling fungus - possible causitive agent of sporotrichosis | Fungi |
| Spraguea_lophii | 6 | 0 | 6 | 45 | 13.3 | Microsporidian that infects Monkfish | Fungi |
| Wallemia_ichthyophaga | 18 | 0 | 18 | 127 | 14.2 | Most halophilic fungus known | Fungi |
| Chaetomium_thermophilum | 90 | 0 | 90 | 204 | 44.1 | Thermophilic filamentous fungus | Fungi |
| Stachybotrys_chartarum | 100 | 0 | 100 | 405 | 24.7 | Black mold that causes poor indoor air quality | Fungi |
| Stachybotrys_chlorohalonata | 102 | 0 | 102 | 367 | 27.8 | Black mold that causes poor indoor air quality | Fungi |
| Wallemia_sebi | 17 | 0 | 17 | 130 | 13.1 | Brown mold commonly found in indoor air dust | Fungi |
| Wickerhamomyces_ciferrii | 50 | 0 | 50 | 215 | 23.3 | Yeast | Fungi |
| Stagonospora_nodorum | 81 | 0 | 81 | 309 | 26.2 | Septoria nodorum, pathogen of wheat and related cereals, cause of glum | Fungi |
| Amanita_muscaria | 39 | 0 | 39 | 263 | 14.8 | Fly agaric mushroom | Fungi |
| Alternaria_brassicicola | 69 | 0 | 69 | 223 | 30.9 | Plant pathogen (brassica dark leaf spot) | Fungi |
| Ceriporiopsis_subvermispora | 30 | 0 | 30 | 222 | 13.5 | White-rot fungus | Fungi |
| Allomyces_macrogynus | 47 | 2 | 45 | 365 | 12.9 | Zoosporic fungus | Fungi |
| Sporobolomyces_roseus | 16 | 0 | 16 | 101 | 15.8 | Red yeast, related to rusts and smuts | Fungi |
| Sporisorium_reilianum | 24 | 0 | 24 | 205 | 11.7 | Causal agent of maize head smut | Fungi |
| Chaetomium_globosum | 89 | 0 | 89 | 318 | 28.0 | Mold allergen | Fungi |
| Capronia_epimyces | 87 | 0 | 87 | 365 | 23.8 | Black yeast | Fungi |
| Clavispora_lusitaniae | 36 | 0 | 36 | 175 | 20.6 | Yeast | Fungi |
| Claviceps_purpurea | 81 | 0 | 81 | 255 | 31.8 | Fungus that grows on the ears of cereal plants | Fungi |
| Cladophialophora_yegresii | 78 | 0 | 78 | 286 | 27.3 | Cladophialophora yegresii | Fungi |
| Cladophialophora_immunda | 84 | 0 | 84 | 626 | 13.4 | Black yeast | Fungi |
| Cladophialophora_carrionii | 80 | 0 | 80 | 318 | 25.2 | Cause of chromoblastomycosis | Fungi |
| Cladophialophora_bantiana | 77 | 0 | 77 | 415 | 18.6 | Dematiaceous fungus - causes brain abscesses | Fungi |
| Capronia_semiimmersa | 83 | 0 | 83 | 479 | 17.3 | Black yeast | Fungi |
| Zootermopsis_nevadensis | 202 | 0 | 202 | 712 | 28.4 | Dampwood termite | Metazoa |
| Ophisaurus_gracilis | 532 | 0 | 532 | 942 | 56.5 | Burmese glass lizard | Metazoa |
| Pan_paniscus | 1 | 1 | 0 | 1 | 100.0 | Bonobo | Metazoa |
| Strongylus_vulgaris | 80 | 0 | 80 | 279 | 28.7 | Blood worm - common horse parasite | Metazoa |
| Trichoplax_adhaerens | 104 | 1 | 103 | 269 | 38.7 | Placozoan (simple animal) | Metazoa |
| Trichuris_suis | 119 | 0 | 119 | 337 | 35.3 | Whipworm | Metazoa |
| Trichuris_muris | 118 | 0 | 118 | 389 | 30.3 | Nematode parasite of mice | Metazoa |
| Opisthorchis_viverrini | 132 | 0 | 132 | 400 | 33.0 | Southeast Asian liver fluke | Metazoa |
| Otolemur_garnettii | 892 | 0 | 892 | 1376 | 64.8 | Small-eared galago | Metazoa |
| Oncorhynchus_tshawytscha | 1 | 1 | 0 | 1 | 100.0 | Black salmon | Metazoa |
| Onchocerca_volvulus | 153 | 0 | 153 | 404 | 37.9 | Nematode causing river blindness | Metazoa |
| Ovis_aries | 743 | 0 | 743 | 1171 | 63.5 | Sheep | Metazoa |
| Pan_troglodytes | 1000 | 1 | 999 | 1360 | 73.5 | Chimpanzee | Metazoa |
| Parastrongyloides_trichosuri | 158 | 0 | 158 | 424 | 37.3 | Nematode parasite of mammals | Metazoa |
| Wuchereria_bancrofti | 120 | 2 | 118 | 419 | 28.6 | W. bancrofti (nematode) | Metazoa |
| Xenopus_tropicalis | 753 | 13 | 740 | 1377 | 54.7 | Western clawed frog | Metazoa |
| Patiria_miniata | 1 | 1 | 0 | 1 | 100.0 | Bat star | Metazoa |
| Oryzias_latipes | 732 | 5 | 727 | 1189 | 61.6 | Medaka fish | Metazoa |
| Tursiops_truncatus | 693 | 1 | 692 | 1133 | 61.2 | Atlantic bottle-nosed dolphin | Metazoa |
| Xenopus_laevis | 781 | 11 | 770 | 1112 | 70.2 | African clawed frog | Metazoa |
| Tyto_alba | 289 | 0 | 289 | 506 | 57.1 | Barn owl | Metazoa |
| Parascaris_equorum | 48 | 0 | 48 | 197 | 24.4 | Equine roundworm | Metazoa |
| Papio_anubis | 964 | 0 | 964 | 1383 | 69.7 | Olive baboon | Metazoa |
| Oryctolagus_cuniculus | 741 | 2 | 739 | 1126 | 65.8 | Rabbit | Metazoa |
| Gasterosteus_aculeatus | 786 | 3 | 783 | 1223 | 64.3 | Three-spined stickleback | Metazoa |
| Vicugna_pacos | 301 | 0 | 301 | 616 | 48.9 | Alpaca | Metazoa |
| Trichuris_trichiura | 107 | 0 | 107 | 290 | 36.9 | Round worm that causes trichuriasis | Metazoa |
| Xiphophorus_maculatus | 765 | 0 | 765 | 1328 | 57.6 | Platyfish | Metazoa |
| Trionyx_sinensis | 1 | 1 | 0 | 1 | 100.0 | Chinese softshell turtle | Metazoa |
| Tripedalia_cystophora | 1 | 1 | 0 | 1 | 100.0 | Box jellyfish | Metazoa |
| Oreochromis_niloticus | 871 | 0 | 871 | 1477 | 59.0 | Nile tilapia | Metazoa |
| Ornithorhynchus_anatinus | 484 | 3 | 481 | 833 | 58.1 | Duckbill platypus | Metazoa |
| Tupaia_belangeri | 401 | 1 | 400 | 792 | 50.6 | Northern treeshrew | Metazoa |
| Schmidtea_mediterranea | 246 | 0 | 246 | 897 | 27.4 | Freshwater planarian | Metazoa |
| Rhabditophanes_kr3021 | 152 | 0 | 152 | 477 | 31.9 | Nematode | Metazoa |
| Rattus_norvegicus | 898 | 26 | 872 | 1362 | 65.9 | Rat | Metazoa |
| Spirometra_erinaceieuropaei | 95 | 0 | 95 | 633 | 15.0 | Tapeworm that infects domestic animals and humans | Metazoa |
| Romanomermis_culicivorax | 126 | 0 | 126 | 524 | 24.0 | Nematode | Metazoa |
| Steinernema_carpocapsae | 221 | 0 | 221 | 691 | 32.0 | Nematode - usefule in gardening | Metazoa |
| Steinernema_feltiae | 212 | 0 | 212 | 673 | 31.5 | Predatory nematode | Metazoa |
| Sarcophilus_harrisii | 649 | 0 | 649 | 1202 | 54.0 | Tasmanian devil | Metazoa |
| Steinernema_glaseri | 188 | 0 | 188 | 608 | 30.9 | Predatory nematode | Metazoa |
| Steinernema_monticolum | 206 | 0 | 206 | 697 | 29.6 | Nematode common in Korea | Metazoa |
| Steinernema_scapterisci | 193 | 0 | 193 | 739 | 26.1 | Mole cricket nematode | Metazoa |
| Strigamia_maritima | 258 | 0 | 258 | 762 | 33.9 | Centipede | Metazoa |
| Strongylocentrotus_purpuratus | 287 | 8 | 279 | 836 | 34.3 | Sea urchin | Metazoa |
| Strongyloides_papillosus | 169 | 0 | 169 | 493 | 34.3 | Intestinal threadworm | Metazoa |
| Rhodnius_prolixus | 177 | 0 | 177 | 639 | 27.7 | Kissing bug | Metazoa |
| Spadella_cephaloptera | 1 | 1 | 0 | 1 | 100.0 | Chaetognath | Metazoa |
| Schistosoma_rodhaini | 94 | 0 | 94 | 311 | 30.2 | Blood fluke - parasite of wild rodents | Metazoa |
| Schistosoma_mattheei | 100 | 0 | 100 | 343 | 29.2 | Blood fluke - livestock parasite | Metazoa |
| Schistosoma_margrebowiei | 83 | 0 | 83 | 278 | 29.9 | Basal member of Schistosoma blood flukes | Metazoa |
| Schistosoma_mansoni | 148 | 6 | 142 | 393 | 37.7 | Blood fluke | Metazoa |
| Schistosoma_japonicum | 128 | 1 | 127 | 391 | 32.7 | Blood fluke | Metazoa |
| Schistosoma_haematobium | 131 | 0 | 131 | 393 | 33.3 | Digenetic trematode, found in Africa and the Middle East | Metazoa |
| Schistosoma_curassoni | 93 | 0 | 93 | 346 | 26.9 | Trematode - parasite of sheep, cattle and goats | Metazoa |
| Schistocephalus_solidus | 74 | 0 | 74 | 525 | 14.1 | Tapeworm of fish | Metazoa |
| Sarsia_sp._Long_Island_Sound | 1 | 1 | 0 | 1 | 100.0 | Prolate hydromedusa | Metazoa |
| Saccoglossus_kowalevskii | 298 | 0 | 298 | 1046 | 28.5 | Acorn worm | Metazoa |
| Soboliphyme_baturini | 80 | 0 | 80 | 249 | 32.1 | Parasitic nematode | Metazoa |
| Solenopsis_invicta | 193 | 0 | 193 | 665 | 29.0 | Fire ant | Metazoa |
| Sorex_araneus | 309 | 0 | 309 | 612 | 50.5 | Eurasian common shrew | Metazoa |
| Strongyloides_stercoralis | 164 | 0 | 164 | 420 | 39.0 | Threadworm - human pathogenic parasitic roundworm causing the disease | Metazoa |
| Pteropus_vampyrus | 675 | 1 | 674 | 1081 | 62.4 | Large flying fox | Metazoa |
| Strongyloides_venezuelensis | 164 | 0 | 164 | 430 | 38.1 | Threadworm - infects mice | Metazoa |
| Teladorsagia_circumcincta | 160 | 0 | 160 | 484 | 33.1 | Parasitic nematode that infects sheep and goats | Metazoa |
| Tetranychus_urticae | 256 | 0 | 256 | 554 | 46.2 | Two-spotted spider mite | Metazoa |
| Pleurobrachia_pileus | 1 | 1 | 0 | 1 | 100.0 | Sea gooseberry | Metazoa |
| Tetraodon_nigroviridis | 799 | 18 | 781 | 1265 | 63.2 | Green puffer | Metazoa |
| Thelazia_callipaeda | 120 | 0 | 120 | 337 | 35.6 | Parasitic nematode - the most common cause of thelaziasis | Metazoa |
| Toxocara_canis | 100 | 0 | 100 | 323 | 31.0 | Dog roundworm | Metazoa |
| Tribolium_castaneum | 256 | 0 | 256 | 713 | 35.9 | Beetle | Metazoa |
| Trichinella_nativa | 121 | 0 | 121 | 335 | 36.1 | Nematode worm found in arctic and subarctic regions | Metazoa |
| Phlebotomus_papatasi | 162 | 0 | 162 | 641 | 25.3 | Sand fly | Metazoa |
| Trichinella_spiralis | 128 | 0 | 128 | 384 | 33.3 | Trichina worm - cause of trichinosis | Metazoa |
| Petromyzon_marinus | 198 | 1 | 197 | 463 | 42.8 | Lamprey | Metazoa |
| Trichobilharzia_regenti | 109 | 0 | 109 | 349 | 31.2 | Nasal parasite of birds that causes cercarial dermatitis in humans | Metazoa |
| Pelodiscus_sinensis | 608 | 0 | 608 | 1176 | 51.7 | Chinese softshell turtle | Metazoa |
| Tarsius_syrichta | 369 | 1 | 368 | 823 | 44.8 | Philippine tarsier | Metazoa |
| Podocoryne_carnea | 1 | 1 | 0 | 1 | 100.0 | Jellyfish | Metazoa |
| Protopolystoma_xenopodis | 90 | 0 | 90 | 360 | 25.0 | Flatworm | Metazoa |
| Procavia_capensis | 509 | 1 | 508 | 962 | 52.9 | Cape hyrax | Metazoa |
| Pristionchus_pacificus | 129 | 0 | 129 | 711 | 18.1 | P. pacificus (nematode) | Metazoa |
| Sus_scrofa | 795 | 3 | 792 | 1193 | 66.6 | Pig | Metazoa |
| Syphacia_muris | 147 | 0 | 147 | 343 | 42.9 | Rat pinworm | Metazoa |
| Taenia_asiatica | 100 | 0 | 100 | 298 | 33.6 | Asian tapeworm | Metazoa |
| Pristionchus_exspectatus | 153 | 0 | 153 | 736 | 20.8 | Non-parasitic nematode | Metazoa |
| Taenia_solium | 130 | 0 | 130 | 437 | 29.7 | Pork tapeworm | Metazoa |
| Taeniopygia_guttata | 552 | 2 | 550 | 1143 | 48.3 | Zebra finch | Metazoa |
| Pongo_abelii | 937 | 1 | 936 | 1348 | 69.5 | Sumatran orangutan | Metazoa |
| Pogona_vitticeps | 657 | 0 | 657 | 1476 | 44.5 | Central bearded dragon | Metazoa |
| Poecilia_formosa | 900 | 0 | 900 | 1635 | 55.0 | Amazon molly | Metazoa |
| Takifugu_rubripes | 824 | 4 | 820 | 1252 | 65.8 | Pufferfish | Metazoa |
| Pediculus_humanus | 241 | 1 | 240 | 569 | 42.4 | Head louse | Metazoa |
| Echinococcus_granulosus | 1 | 1 | 0 | 1 | 100.0 | Hyper Tape-worm | Metazoa |
| Erinaceus_europaeus | 380 | 0 | 380 | 715 | 53.1 | Western European hedgehog | Metazoa |
| Fasciola_hepatica | 123 | 0 | 123 | 357 | 34.5 | Common liver fluke - parasitic trematode | Metazoa |
| Felis_catus | 736 | 0 | 736 | 1091 | 67.5 | Cat | Metazoa |
| Ficedula_albicollis | 590 | 0 | 590 | 801 | 73.7 | Collared flycatcher | Metazoa |
| Branchiostoma_floridae | 511 | 3 | 508 | 2648 | 19.3 | Florida lancelet (fish) | Metazoa |
| Gadus_morhua | 732 | 0 | 732 | 1211 | 60.4 | Atlantic cod | Metazoa |
| Gallus_gallus | 598 | 12 | 586 | 837 | 71.4 | Chicken | Metazoa |
| Geospiza_fortis | 463 | 0 | 463 | 763 | 60.7 | Medium ground finch | Metazoa |
| Globodera_pallida | 104 | 0 | 104 | 421 | 24.7 | Nematode - pathogen of potatoes | Metazoa |
| Equus_caballus | 769 | 0 | 769 | 1197 | 64.2 | Horse | Metazoa |
| Enterobius_vermicularis | 122 | 0 | 122 | 377 | 32.4 | Pinworm - parasitic nematode | Metazoa |
| Brugia_malayi | 154 | 1 | 153 | 416 | 37.0 | B. malayi (nematode) | Metazoa |
| Echinococcus_multilocularis | 123 | 0 | 123 | 369 | 33.3 | Tapeworm | Metazoa |
| Echinops_telfairi | 440 | 0 | 440 | 964 | 45.6 | Lesser hedgehog tenrec | Metazoa |
| Echinostoma_caproni | 85 | 0 | 85 | 264 | 32.2 | Parasitic intestinal fluke | Metazoa |
| Bursaphelenchus_xylophilus | 164 | 0 | 164 | 488 | 33.6 | Pine wood nematode | Metazoa |
| Elaeophora_elaphi | 105 | 0 | 105 | 308 | 34.1 | Nematode parasite found in the blood vessels of the liver in Red Deer | Metazoa |
| Buceros_rhinoceros | 354 | 0 | 354 | 590 | 60.0 | Rhinoceros hornbill | Metazoa |
| Eleutheria_dichotoma | 2 | 2 | 0 | 2 | 100.0 | Eleutheria dichotoma (cnidarian) | Metazoa |
| Brugia_timori | 105 | 0 | 105 | 323 | 32.5 | Human filarial parasitic nematode (roundworm) - causes Timor filariasi | Metazoa |
| Brugia_pahangi | 1 | 1 | 0 | 1 | 100.0 | Microfilarial nematode (parasite) | Metazoa |
| Bos_taurus | 838 | 0 | 838 | 1252 | 66.9 | Bovine | Metazoa |
| Gongylonema_pulchrum | 67 | 0 | 67 | 387 | 17.3 | Nematode - cause of Gongylonema infection in humans | Metazoa |
| Heterodontus_francisci | 1 | 1 | 0 | 1 | 100.0 | Horn shark | Metazoa |
| Heterorhabditis_bacteriophora | 87 | 0 | 87 | 339 | 25.7 | Beneficial nematode (used in gardening) | Metazoa |
| Atta_cephalotes | 207 | 0 | 207 | 722 | 28.7 | Leafcutter ant | Metazoa |
| Homo_sapiens | 1200 | 1089 | 111 | 1639 | 73.2 | Human | Metazoa |
| Astyanax_mexicanus | 839 | 0 | 839 | 1483 | 56.6 | Blind cave fish | Metazoa |
| Ascaris_suum | 165 | 0 | 165 | 426 | 38.7 | Large roundworm of pigs | Metazoa |
| Ascaris_lumbricoides | 91 | 0 | 91 | 289 | 31.5 | Giant roundworm of humans | Metazoa |
| Hydatigera_taeniaeformis | 102 | 0 | 102 | 306 | 33.3 | Feline tapeworm | Metazoa |
| Hydra_magnipapillata | 123 | 1 | 122 | 649 | 19.0 | Fresh water polp | Metazoa |
| Helobdella_robusta | 348 | 0 | 348 | 1055 | 33.0 | Leech | Metazoa |
| Heligmosomoides_bakeri | 97 | 0 | 97 | 345 | 28.1 | Parasitic nematode | Metazoa |
| Heliconius_melpomene | 193 | 0 | 193 | 619 | 31.2 | Postman butterfly | Metazoa |
| Gorilla_gorilla | 992 | 0 | 992 | 1402 | 70.8 | Gorilla | Metazoa |
| Crassostrea_gigas | 268 | 0 | 268 | 846 | 31.7 | Pacific oyster | Metazoa |
| Haemonchus_contortus | 206 | 0 | 206 | 563 | 36.6 | Barber pole worm | Metazoa |
| Haemonchus_placei | 123 | 0 | 123 | 347 | 35.4 | Parasitic roundworm that infects cattle and sheep | Metazoa |
| Halocynthia_roretzi | 1 | 1 | 0 | 1 | 100.0 | Sea pineapple | Metazoa |
| Halyomorpha_halys | 146 | 0 | 146 | 462 | 31.6 | Stink bug | Metazoa |
| Bos_grunniens | 751 | 0 | 751 | 1249 | 60.1 | Yak | Metazoa |
| Bombyx_mori | 211 | 6 | 205 | 729 | 28.9 | Silk moth | Metazoa |
| Biomphalaria_glabrata | 170 | 0 | 170 | 566 | 30.0 | Air-breathing freshwater snail | Metazoa |
| Hymenolepis_diminuta | 84 | 0 | 84 | 283 | 29.7 | Rat tapeworm | Metazoa |
| Ciona_intestinalis | 181 | 7 | 174 | 478 | 37.9 | Transparent sea squirt | Metazoa |
| Canis_familiaris | 861 | 1 | 860 | 1267 | 68.0 | Dog | Metazoa |
| Camponotus_floridanus | 215 | 0 | 215 | 649 | 33.1 | Florida carpenter ant | Metazoa |
| Cylicostephanus_goldi | 46 | 0 | 46 | 185 | 24.9 | Parasitic nematode that lives in the large intestine of horses | Metazoa |
| Callithrix_jacchus | 932 | 0 | 932 | 1373 | 67.9 | Common marmoset | Metazoa |
| Danaus_plexippus | 229 | 0 | 229 | 758 | 30.2 | Monarch butterfly | Metazoa |
| Danio_rerio | 899 | 19 | 880 | 2350 | 38.3 | Zebrafish | Metazoa |
| Daphnia_pulex | 242 | 1 | 241 | 733 | 33.0 | Water flea | Metazoa |
| Dasypus_novemcinctus | 806 | 1 | 805 | 1383 | 58.3 | Nine-banded armadillo | Metazoa |
| Dendroctonus_ponderosae | 223 | 0 | 223 | 625 | 35.7 | Mountain pine beetle | Metazoa |
| Cupiennius_salei | 1 | 1 | 0 | 1 | 100.0 | Central American wandering spider | Metazoa |
| Culex_quinquefasciatus | 251 | 0 | 251 | 1202 | 20.9 | C. quinquefasciatus (mosquito) | Metazoa |
| Capitella_teleta | 322 | 0 | 322 | 1079 | 29.8 | Segmented worm | Metazoa |
| Ciona_savignyi | 169 | 0 | 169 | 431 | 39.2 | Pacific transparent sea squirt | Metazoa |
| Cimex_lectularius | 212 | 0 | 212 | 625 | 33.9 | Bed bug | Metazoa |
| Cicer_arietinum | 838 | 0 | 838 | 1422 | 58.9 | Chickpea | Metazoa |
| Choloepus_hoffmanni | 300 | 1 | 299 | 701 | 42.8 | Hoffmanns two-fingered sloth | Metazoa |
| Clonorchis_sinensis | 145 | 0 | 145 | 501 | 28.9 | Chinese liver fluke | Metazoa |
| Chlorocebus_sabaeus | 1008 | 0 | 1008 | 1421 | 70.9 | Green monkey | Metazoa |
| Chelonia_mydas | 539 | 0 | 539 | 1367 | 39.4 | Green sea turtle | Metazoa |
| Cavia_porcellus | 749 | 2 | 747 | 1022 | 73.3 | Guinea pig | Metazoa |
| Culex_pipiens | 251 | 0 | 251 | 1234 | 20.3 | C. pipiens (mosquito) | Metazoa |
| Dictyocaulus_viviparus | 139 | 0 | 139 | 389 | 35.7 | Bovine lungworm | Metazoa |
| Caenorhabditis_remanei | 334 | 0 | 334 | 1136 | 29.4 | C. remanei (nematode) | Metazoa |
| Drosophila_pseudoobscura | 352 | 1 | 351 | 699 | 50.4 | Fruit fly | Metazoa |
| Drosophila_sechellia | 369 | 0 | 369 | 710 | 52.0 | D. sechellia (fruit fly) | Metazoa |
| Caenorhabditis_elegans | 373 | 202 | 171 | 766 | 48.7 | C. elegans | Metazoa |
| Caenorhabditis_briggsae | 313 | 23 | 290 | 855 | 36.6 | C. briggsae | Metazoa |
| Caenorhabditis_brenneri | 323 | 1 | 322 | 1001 | 32.3 | C. brenneri (nematode) | Metazoa |
| Drosophila_simulans | 323 | 0 | 323 | 645 | 50.1 | D. simulans (fruit fly) | Metazoa |
| Drosophila_virilis | 345 | 1 | 344 | 734 | 47.0 | D. virilis (fruit fly) | Metazoa |
| Drosophila_willistoni | 359 | 0 | 359 | 694 | 51.7 | D. willistoni (fruit fly) | Metazoa |
| Drosophila_yakuba | 385 | 1 | 384 | 732 | 52.6 | D. yakuba (fruit fly) | Metazoa |
| Drosophila_persimilis | 326 | 0 | 326 | 701 | 46.5 | D. persimilis (fruit fly) | Metazoa |
| Drosophila_mojavensis | 352 | 0 | 352 | 703 | 50.1 | D. mojavensis (fruit fly) | Metazoa |
| Drosophila_melanogaster | 425 | 397 | 28 | 719 | 59.1 | Fruit fly | Metazoa |
| Caenorhabditis_japonica | 234 | 0 | 234 | 803 | 29.1 | C. japonica (nematode) | Metazoa |
| Diphyllobothrium_latum | 84 | 0 | 84 | 259 | 32.4 | Broad fish tapeworm - can cause Diphyllobothriasis | Metazoa |
| Dipodomys_ordii | 475 | 0 | 475 | 836 | 56.8 | Ords kangaroo rat | Metazoa |
| Dirofilaria_immitis | 157 | 0 | 157 | 443 | 35.4 | Dog heartworm - parasitic roundworm | Metazoa |
| Discocelis_tigrina | 1 | 1 | 0 | 1 | 100.0 | Flatworm | Metazoa |
| Dracunculus_medinensis | 109 | 0 | 109 | 308 | 35.4 | Guinea worm - nematode that causes dracunculiasis | Metazoa |
| Drosophila_ananassae | 342 | 0 | 342 | 701 | 48.8 | D. ananassae (fruit fly) | Metazoa |
| Drosophila_erecta | 374 | 0 | 374 | 704 | 53.1 | D. erecta (fruit fly) | Metazoa |
| Drosophila_grimshawi | 346 | 0 | 346 | 724 | 47.8 | D. grimshawi (fruit fly) | Metazoa |
| Echinococcus_canadensis | 127 | 0 | 127 | 367 | 34.6 | Parasite species of cyclophyllid tapeworms | Metazoa |
| Anopheles_coluzzii | 201 | 0 | 201 | 650 | 30.9 | Mosquito | Metazoa |
| Monodelphis_domestica | 721 | 9 | 712 | 1545 | 46.7 | Short-tailed gray opossum | Metazoa |
| Anopheles_albimanus | 201 | 0 | 201 | 590 | 34.1 | Mosquito | Metazoa |
| Anisakis_simplex | 128 | 0 | 128 | 391 | 32.7 | Herring worm | Metazoa |
| Musca_domestica | 334 | 0 | 334 | 800 | 41.8 | Housefly | Metazoa |
| Mus_musculus | 938 | 648 | 290 | 1513 | 62.0 | Mouse | Metazoa |
| Mustela_putorius_furo | 817 | 0 | 817 | 1202 | 68.0 | Ferret | Metazoa |
| Myotis_lucifugus | 706 | 0 | 706 | 1046 | 67.5 | Little brown bat | Metazoa |
| Angiostrongylus_costaricensis | 97 | 0 | 97 | 253 | 38.3 | Parasitic nematode | Metazoa |
| Angiostrongylus_cantonensis | 96 | 0 | 96 | 268 | 35.8 | Parasitic nematode (roundworm) that causes Angiostrongyliasis | Metazoa |
| Mnemiopsis_leidyi | 112 | 0 | 112 | 452 | 24.8 | Warty comb jelly | Metazoa |
| Anopheles_arabiensis | 224 | 0 | 224 | 625 | 35.8 | Mosquito | Metazoa |
| Microcebus_murinus | 578 | 1 | 577 | 1016 | 56.9 | Lesser mouse lemur | Metazoa |
| Anopheles_christyi | 160 | 0 | 160 | 518 | 30.9 | Mosquito | Metazoa |
| Megaselia_scalaris | 110 | 0 | 110 | 336 | 32.7 | Humpbacked fly | Metazoa |
| Meleagris_gallopavo | 447 | 9 | 438 | 684 | 65.4 | Common turkey | Metazoa |
| Melitaea_cinxia | 160 | 0 | 160 | 720 | 22.2 | Glanville fritillary (butterfly) | Metazoa |
| Meloidogyne_floridensis | 125 | 0 | 125 | 870 | 14.4 | Root-knot nematode | Metazoa |
| Meloidogyne_hapla | 88 | 0 | 88 | 478 | 18.4 | Northern root-knot nematode | Metazoa |
| Meloidogyne_incognita | 110 | 1 | 109 | 766 | 14.4 | Southern root-knot nematode | Metazoa |
| Mesocestoides_corti | 103 | 0 | 103 | 309 | 33.3 | Tapeworm - parasite of mice | Metazoa |
| Anopheles_atroparvus | 233 | 0 | 233 | 635 | 36.7 | Mosquito | Metazoa |
| Ancylostoma_duodenale | 120 | 0 | 120 | 475 | 25.3 | Parasitic nematode - Old World hookworm | Metazoa |
| Nasonia_vitripennis | 221 | 3 | 218 | 633 | 34.9 | Parasitoid wasp | Metazoa |
| Acipenser_baerii | 1 | 1 | 0 | 1 | 100.0 | Siberian sturgeon | Metazoa |
| Acanthocheilonema_viteae | 144 | 0 | 144 | 384 | 37.5 | Parasitic nematode | Metazoa |
| Nippostrongylus_brasiliensis | 122 | 0 | 122 | 393 | 31.0 | Gastrointestinal roundworm | Metazoa |
| Nomascus_leucogenys | 910 | 0 | 910 | 1310 | 69.5 | Northern white-cheeked gibbon | Metazoa |
| Ochotona_princeps | 524 | 1 | 523 | 880 | 59.5 | Southern American pika | Metazoa |
| Octopus_bimaculoides | 219 | 0 | 219 | 2346 | 9.3 | Octopus | Metazoa |
| Oesophagostomum_dentatum | 119 | 0 | 119 | 430 | 27.7 | Nodule worm | Metazoa |
| Oikopleura_dioica | 134 | 5 | 129 | 506 | 26.5 | Tunicate | Metazoa |
| Onchocerca_flexuosa | 100 | 0 | 100 | 335 | 29.9 | Parasitic roundworm | Metazoa |
| Acropora_formosa | 1 | 1 | 0 | 1 | 100.0 | Small polyp stony coral | Metazoa |
| Acropora_millepora | 1 | 1 | 0 | 1 | 100.0 | Small polyp stony coral | Metazoa |
| Acyrthosiphon_pisum | 254 | 1 | 253 | 2195 | 11.6 | Pea aphid | Metazoa |
| Necator_americanus | 134 | 0 | 134 | 403 | 33.3 | New World hookworm | Metazoa |
| Nematostella_vectensis | 296 | 27 | 269 | 744 | 39.8 | Starlet sea anemone | Metazoa |
| Ancylostoma_ceylanicum | 127 | 0 | 127 | 378 | 33.6 | Parasitic roundworm (hookworm) | Metazoa |
| Ancylostoma_caninum | 165 | 0 | 165 | 580 | 28.4 | Hookworm nematode | Metazoa |
| Anas_platyrhynchos | 504 | 0 | 504 | 741 | 68.0 | Wild duck | Metazoa |
| Amphimedon_queenslandica | 89 | 0 | 89 | 535 | 16.6 | Sponge | Metazoa |
| Alligator_sinensis | 562 | 0 | 562 | 1193 | 47.1 | Chinese alligator | Metazoa |
| Ailuropoda_melanoleuca | 808 | 1 | 807 | 1170 | 69.1 | Panda | Metazoa |
| Aedes_aegypti | 254 | 2 | 252 | 1051 | 24.2 | Yellowfever mosquito | Metazoa |
| Onchocerca_ochengi | 137 | 0 | 137 | 395 | 34.7 | Parasitic roundworm | Metazoa |
| Marmota_monax | 1 | 1 | 0 | 1 | 100.0 | Groundhog | Metazoa |
| Hymenolepis_nana | 106 | 0 | 106 | 352 | 30.1 | Dwarf tapeworm (infects humans) | Metazoa |
| Lepisosteus_oculatus | 694 | 0 | 694 | 1071 | 64.8 | Spotted gar | Metazoa |
| Leptinotarsa_decemlineata | 193 | 0 | 193 | 1255 | 15.4 | Colorado potato beetle | Metazoa |
| Hymenolepis_microstoma | 119 | 0 | 119 | 371 | 32.1 | Rodent tapeworm | Metazoa |
| Lingula_unguis | 1 | 1 | 0 | 1 | 100.0 | Lamp shell | Metazoa |
| Anopheles_melas | 227 | 0 | 227 | 721 | 31.5 | Mosquito | Metazoa |
| Litomosoides_sigmodontis | 125 | 0 | 125 | 351 | 35.6 | Nematode (parasite of rodents) | Metazoa |
| Loa_loa | 141 | 0 | 141 | 557 | 25.3 | L. loa (nematode) | Metazoa |
| Lottia_gigantea | 297 | 0 | 297 | 888 | 33.4 | Owl limpet (sea snail) | Metazoa |
| Anopheles_merus | 211 | 0 | 211 | 644 | 32.8 | Mosquito | Metazoa |
| Anopheles_minimus | 223 | 0 | 223 | 626 | 35.6 | Mosquito | Metazoa |
| Anopheles_sinensis | 177 | 0 | 177 | 535 | 33.1 | Mosquito | Metazoa |
| Ictidomys_tridecemlineatus | 823 | 0 | 823 | 1123 | 73.3 | Striped gopher | Metazoa |
| Artemia_franciscana | 1 | 1 | 0 | 1 | 100.0 | Brine shrimp | Metazoa |
| Ixodes_scapularis | 193 | 0 | 193 | 709 | 27.2 | Deer tick | Metazoa |
| Aptenodytes_forsteri | 481 | 0 | 481 | 744 | 64.7 | Emperor penguin | Metazoa |
| Aplysia_californica | 1 | 1 | 0 | 1 | 100.0 | California sea hare | Metazoa |
| Apis_mellifera | 254 | 2 | 252 | 640 | 39.7 | Honey bee | Metazoa |
| Latimeria_chalumnae | 688 | 0 | 688 | 1125 | 61.2 | West Indian Ocean coelacanth | Metazoa |
| Anopheles_stephensi | 224 | 0 | 224 | 603 | 37.1 | Mosquito | Metazoa |
| Anopheles_quadriannulatus | 213 | 0 | 213 | 641 | 33.2 | Mosquito | Metazoa |
| Anopheles_maculatus | 173 | 0 | 173 | 582 | 29.7 | Mosquito | Metazoa |
| Macaca_fascicularis | 882 | 0 | 882 | 1340 | 65.8 | Crab-eating macaque | Metazoa |
| Macropus_eugenii | 491 | 0 | 491 | 867 | 56.6 | Tammar wallaby | Metazoa |
| Anolis_carolinensis | 615 | 5 | 610 | 1448 | 42.5 | Green anole | Metazoa |
| Anopheles_farauti | 234 | 0 | 234 | 639 | 36.6 | Mosquito | Metazoa |
| Anopheles_funestus | 238 | 0 | 238 | 666 | 35.7 | Mosquito | Metazoa |
| Macaca_mulatta | 972 | 0 | 972 | 1421 | 68.4 | Rhesus macaque | Metazoa |
| Lutzomyia_longipalpis | 171 | 0 | 171 | 653 | 26.2 | Sand fly | Metazoa |
| Lucilia_cuprina | 316 | 0 | 316 | 837 | 37.8 | Metazoa | Metazoa |
| Anopheles_gambiae | 255 | 3 | 252 | 688 | 37.1 | Mosquito (seven types) | Metazoa |
| Anopheles_culicifacies | 245 | 0 | 245 | 689 | 35.6 | Mosquito | Metazoa |
| Anopheles_darlingi | 149 | 0 | 149 | 462 | 32.3 | Mosquito | Metazoa |
| Loxodonta_africana | 774 | 0 | 774 | 1058 | 73.2 | African elephant | Metazoa |
| Anopheles_dirus | 220 | 0 | 220 | 629 | 35.0 | Mosquito | Metazoa |
| Anopheles_epiroticus | 211 | 0 | 211 | 619 | 34.1 | Mosquito | Metazoa |
| Aquilegia_coerulea | 580 | 0 | 580 | 1182 | 49.1 | Aquilegia flower | Plants |
| Chlamydomonas_reinhardtii | 24 | 0 | 24 | 176 | 13.6 | Chlamydomonas | Plants |
| Carica_papaya | 674 | 0 | 674 | 1357 | 49.7 | Papaya | Plants |
| Capsella_grandiflora | 991 | 0 | 991 | 1594 | 62.2 | Close relative of Arabidopsis thaliana | Plants |
| Arabidopsis_thaliana | 1153 | 762 | 391 | 1749 | 65.9 | Mouse-ear cress | Plants |
| Vitis_vinifera | 849 | 3 | 846 | 1388 | 61.2 | Common Grape Vine | Plants |
| Cannabis_sativa | 601 | 96 | 505 | 1093 | 55.0 | Marijuana | Plants |
| Brachypodium_distachyon | 791 | 3 | 788 | 1546 | 51.2 | Purple false brome (grass) | Plants |
| Triticum_aestivum | 1635 | 15 | 1620 | 3806 | 43.0 | Bread wheat | Plants |
| Brassica_rapa | 1856 | 0 | 1856 | 2896 | 64.1 | Field mustard | Plants |
| Triticum_urartu | 508 | 0 | 508 | 1346 | 37.7 | Red wild einkorn | Plants |
| Brassica_napus | 10 | 10 | 0 | 10 | 100.0 | Rapeseed | Plants |
| Brassica_oleracea | 1925 | 0 | 1925 | 3271 | 58.9 | Wild cabbage | Plants |
| Amborella_trichopoda | 472 | 0 | 472 | 917 | 51.5 | New Caledonian shrub | Plants |
| Theobroma_cacao | 811 | 0 | 811 | 1473 | 55.1 | Cocoa tree | Plants |
| Antirrhinum_majus | 6 | 6 | 0 | 6 | 100.0 | Snapdragon | Plants |
| Zea_mays | 1245 | 26 | 1219 | 2267 | 54.9 | Maize | Plants |
| Arabidopsis_lyrata | 1036 | 12 | 1024 | 1747 | 59.3 | Mustard | Plants |
| Nicotiana_tabacum | 25 | 25 | 0 | 25 | 100.0 | Tobacco | Plants |
| Malus_domestica | 1424 | 15 | 1409 | 3037 | 46.9 | Apple | Plants |
| Petroselinum_crispum | 5 | 5 | 0 | 5 | 100.0 | Garden parsley | Plants |
| Petunia_x_hybrida | 23 | 23 | 0 | 23 | 100.0 | Petunia | Plants |
| Lycopersicon_esculentum | 1 | 1 | 0 | 1 | 100.0 | Tomato | Plants |
| Phaseolus_vulgaris | 1 | 1 | 0 | 1 | 100.0 | String bean | Plants |
| Phoenix_dactylifera | 281 | 0 | 281 | 752 | 37.4 | True date palm | Plants |
| Physcomitrella_patens | 472 | 29 | 443 | 982 | 48.1 | Moss | Plants |
| Linum_usitatissimum | 1321 | 0 | 1321 | 2452 | 53.9 | Flax | Plants |
| Leersia_perrieri | 804 | 0 | 804 | 1594 | 50.4 | Madagascan grass | Plants |
| Pisum_sativum | 5 | 5 | 0 | 5 | 100.0 | Pea | Plants |
| Lotus_japonicus | 679 | 2 | 677 | 1458 | 46.6 | Wild legume | Plants |
| Ipomoea_batatas | 1 | 1 | 0 | 1 | 100.0 | Sweet potato | Plants |
| Hordeum_vulgare | 602 | 10 | 592 | 1217 | 49.5 | Barley | Plants |
| Populus_trichocarpa | 1359 | 1 | 1358 | 2428 | 56.0 | Black cottonwood/california poplar | Plants |
| Prunus_mume | 741 | 0 | 741 | 1430 | 51.8 | Plum tree | Plants |
| Prunus_persica | 775 | 1 | 774 | 1549 | 50.0 | Peach tree | Plants |
| Manihot_esculenta | 1369 | 2 | 1367 | 2203 | 62.1 | Cassava (woody shrub) | Plants |
| Medicago_sativa | 1 | 1 | 0 | 1 | 100.0 | Alfalfa | Plants |
| Medicago_truncatula | 1083 | 3 | 1080 | 2219 | 48.8 | Barrel Clover (legume) | Plants |
| Nicotiana_sp. | 1 | 1 | 0 | 1 | 100.0 | Tobacco | Plants |
| Oryza_barthii | 708 | 0 | 708 | 1509 | 46.9 | African wild rice | Plants |
| Oryza_brachyantha | 697 | 0 | 697 | 1461 | 47.7 | Wild rice | Plants |
| Oryza_glaberrima | 780 | 0 | 780 | 1578 | 49.4 | African rice | Plants |
| Oryza_glumaepatula | 816 | 0 | 816 | 1639 | 49.8 | Wild rice | Plants |
| Oryza_indica | 881 | 0 | 881 | 1914 | 46.0 | Rice | Plants |
| Oryza_longistaminata | 425 | 0 | 425 | 1076 | 39.5 | Longstamen rice | Plants |
| Oryza_meridionalis | 728 | 0 | 728 | 1439 | 50.6 | Wild rice | Plants |
| Oryza_nivara | 825 | 0 | 825 | 1680 | 49.1 | Wild rice | Plants |
| Oryza_punctata | 807 | 0 | 807 | 1622 | 49.8 | Red rice | Plants |
| Oryza_rufipogon | 822 | 0 | 822 | 1677 | 49.0 | Brownbeard rice | Plants |
| Oryza_sativa | 787 | 53 | 734 | 1537 | 51.2 | Rice | Plants |
| Ostreococcus_lucimarinus | 30 | 0 | 30 | 128 | 23.4 | Single-celled alga | Plants |
| Panicum_virgatum | 1747 | 0 | 1747 | 3981 | 43.9 | Switchgrass | Plants |
| Musa_acuminata | 1837 | 0 | 1837 | 2746 | 66.9 | Banana | Plants |
| Mimulus_guttatus | 859 | 0 | 859 | 1654 | 51.9 | Common monkey flower | Plants |
| Helianthus_annuus | 1 | 1 | 0 | 1 | 100.0 | Sunflower | Plants |
| Glycine_max | 2238 | 3 | 2235 | 3682 | 60.8 | Soybean | Plants |
| Citrullus_lanatus | 812 | 0 | 812 | 1290 | 62.9 | Watermelon | Plants |
| Eutrema_salsugineum | 1051 | 0 | 1051 | 1706 | 61.6 | Salt cress | Plants |
| Selaginella_moellendorffii | 539 | 0 | 539 | 1163 | 46.3 | Ancient vascular plant | Plants |
| Fragaria_vesca | 691 | 0 | 691 | 1573 | 43.9 | Wild strawberry | Plants |
| Cyanidioschyzon_merolae | 12 | 0 | 12 | 89 | 13.5 | Red alga | Plants |
| Gossypium_raimondii | 1587 | 0 | 1587 | 2589 | 61.3 | Diploid cotton tree | Plants |
| Setaria_italica | 880 | 0 | 880 | 1798 | 48.9 | Foxtail millet | Plants |
| Solanum_lycopersicum | 969 | 2 | 967 | 1773 | 54.7 | Tomato | Plants |
| Solanum_tuberosum | 936 | 0 | 936 | 1826 | 51.3 | Potato | Plants |
| Salix_purpurea | 1549 | 0 | 1549 | 2653 | 58.4 | Purple willow | Plants |
| Cucumis_sativus | 834 | 0 | 834 | 1371 | 60.8 | Cucumber | Plants |
| Citrus_clementina | 752 | 0 | 752 | 1370 | 54.9 | Clementine tree | Plants |
| Citrus_sinensis | 711 | 0 | 711 | 1313 | 54.2 | Orange tree | Plants |
| Eucalyptus_grandis | 944 | 0 | 944 | 1727 | 54.7 | Flooded gum tree | Plants |
| Ricinus_communis | 661 | 1 | 660 | 1296 | 51.0 | Castor oil plant | Plants |
| Sorghum_bicolor | 859 | 0 | 859 | 1882 | 45.6 | Sorghum (drought-tolerant African grass) | Plants |
| Entamoeba_dispar | 7 | 0 | 7 | 87 | 8.0 | Entamoeba (animal parasite) | Protists |
| Entamoeba_histolytica | 7 | 0 | 7 | 98 | 7.1 | Entamoeba (animal parasite) | Protists |
| Dictyostelium_purpureum | 38 | 0 | 38 | 144 | 26.4 | Slime mold | Protists |
| Dictyostelium_discoideum | 51 | 40 | 11 | 148 | 34.5 | Slime mold | Protists |
| Monosiga_brevicollis | 17 | 1 | 16 | 153 | 11.1 | Choanoflagellate | Protists |
| Eimeria_tenella | 4 | 0 | 4 | 71 | 5.6 | Causes cecal coccidiosis in young poultry | Protists |
| Saprolegnia_parasitica | 16 | 0 | 16 | 255 | 6.3 | Water mold | Protists |
| Paramecium_tetraurelia | 120 | 6 | 114 | 747 | 16.1 | Ciliate | Protists |
| Salpingoeca_rosetta | 16 | 0 | 16 | 168 | 9.5 | Choanoflagellate | Protists |
| Cryptosporidium_hominis | 4 | 0 | 4 | 37 | 10.8 | Protist (human parasite) | Protists |
| Cryptosporidium_muris | 5 | 0 | 5 | 36 | 13.9 | Protist (human parasite) | Protists |
| Cryptosporidium_parvum | 4 | 1 | 3 | 41 | 9.8 | Cryptosporidium parvum | Protists |
| Capsaspora_owczarzaki | 22 | 1 | 21 | 176 | 12.5 | Protist (snail symbiont) | Protists |
| Neospora_caninum | 6 | 0 | 6 | 81 | 7.4 | Protist (animal parasite) | Protists |
| Naegleria_gruberi | 17 | 1 | 16 | 244 | 7.0 | Amoeba | Protists |
| Oxytricha_trifallax | 27 | 0 | 27 | 315 | 8.6 | Ciliate protozoan | Protists |
| Acanthamoeba_castellanii | 1 | 1 | 0 | 1 | 100.0 | Amoebae | Protists |
| Trypanosoma_vivax | 1 | 0 | 1 | 70 | 1.4 | Protist (animal parasite) | Protists |
| Trypanosoma_cruzi | 0 | 0 | 0 | 24 | 0.0 | Trypanosoma cruzi | Protists |
| Trypanosoma_congolense | 0 | 0 | 0 | 78 | 0.0 | Protist (animal parasite) | Protists |
| Plasmodium_chabaudi | 15 | 0 | 15 | 46 | 32.6 | Protist (animal parasite) | Protists |
| Plasmodium_falciparum | 23 | 20 | 3 | 47 | 48.9 | Malaria | Protists |
| Plasmodium_knowlesi | 16 | 0 | 16 | 46 | 34.8 | Protist (animal parasite) | Protists |
| Plasmodium_yoelii | 13 | 0 | 13 | 42 | 31.0 | Protist (animal parasite) | Protists |
| Theileria_parva | 6 | 0 | 6 | 37 | 16.2 | Cattle Parasite | Protists |
| Babesia_bovis | 13 | 0 | 13 | 49 | 26.5 | Cattle Parasite | Protists |
| Thecamonas_trahens | 15 | 0 | 15 | 100 | 15.0 | Gliding zooflagellate | Protists |
| Polysphondylium_pallidum | 37 | 0 | 37 | 137 | 27.0 | Cellular slime mold | Protists |
| Theileria_annulata | 7 | 0 | 7 | 41 | 17.1 | Cattle Parasite | Protists |
| Trichomonas_vaginalis | 157 | 13 | 144 | 2313 | 6.8 | Trichomonas vaginalis | Protists |
| Plasmodium_berghei | 14 | 0 | 14 | 49 | 28.6 | Protist (animal parasite) | Protists |
| Leishmania_braziliensis | 0 | 0 | 0 | 21 | 0.0 | Protist (human parasite) | Protists |
| Trypanosoma_brucei | 0 | 0 | 0 | 18 | 0.0 | Trypanosoma brucei | Protists |
| Entamoeba_invadens | 4 | 0 | 4 | 107 | 3.7 | Entamoeba (animal parasite) | Protists |
| Tetrahymena_thermophila | 28 | 3 | 25 | 132 | 21.2 | Ciliate | Protists |
| Phytophthora_capsici | 28 | 0 | 28 | 263 | 10.6 | Plant pathogen | Protists |
| Plasmodium_vivax | 15 | 0 | 15 | 45 | 33.3 | Protist (animal parasite) | Protists |
| Giardia_lamblia | 1 | 0 | 1 | 31 | 3.2 | Giardia lamblia | Protists |
| Leishmania_mexicana | 0 | 0 | 0 | 18 | 0.0 | Protist (human parasite) | Protists |
| Leishmania_major | 0 | 0 | 0 | 20 | 0.0 | Leishmania major | Protists |
| Leishmania_infantum | 0 | 0 | 0 | 21 | 0.0 | Protist (human parasite) | Protists |
| Toxoplasma_gondii | 8 | 2 | 6 | 79 | 10.1 | Toxoplasma gondii | Protists |
| PBM_CONSTRUCTS | 43 | 43 | 0 | 43 | 100.0 | Synthetic constructs | Synthetic |
| Bovine_papillomavirus_type_2 | 1 | 1 | 0 | 1 | 100.0 | Bovine papillomavirus type 2 | Virus |
| Avian_sarcoma_virus_17 | 1 | 1 | 0 | 1 | 100.0 | Avian sarcoma virus 17 | Virus |
| Avian_myeloblastosis_virus | 1 | 1 | 0 | 1 | 100.0 | Avian myeloblastosis virus | Virus |
| Avian_musculoaponeurotic_fibrosarcoma_virus_AS42 | 1 | 1 | 0 | 1 | 100.0 | Avian musculoaponeurotic fibrosarcoma virus AS42 | Virus |
| Human_herpesvirus_2 | 1 | 0 | 1 | 1 | 100.0 | Human herpesvirus 2 | Virus |
| Gallid_herpesvirus_2 | 1 | 1 | 0 | 1 | 100.0 | Gallid herpesvirus 2 | Virus |
| Avian_erythroblastosis_virus | 1 | 1 | 0 | 1 | 100.0 | Avian erythroblastosis virus | Virus |
| EpsteinBarr_virus | 3 | 3 | 0 | 3 | 100.0 | Epstein-Barr virus | Virus |
| Acanthamoeba_polyphaga_mimivirus | 1 | 1 | 0 | 1 | 100.0 | Mimivirus | Virus |