CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

Family Name	Num Motifs	Total Direct	Total Inferred	Total TFs	Pct TFs	PFam ID
TCR/CxC	1214	22	1192	1214	100.0	TCR
RRM	1	1	0	1	100.0	RRM_1
AT hook	1072	36	1036	1075	99.7	AT_hook
Dof	2023	50	1973	2103	96.2	zf-Dof
Ets	3247	64	3183	3472	93.5	Ets
E2F	2004	34	1970	2210	90.7	E2F_TDP
TCP	1342	42	1300	1493	89.9	TCP
WRKY	4675	52	4623	5410	86.4	WRKY
Homeodomain	27728	660	27068	33601	82.5	Homeobox
RFX	1064	24	1040	1307	81.4	RFX_DNA_binding
EBF1	433	8	425	537	80.6	COE1_DBD
CUT+Homeodomain	605	13	592	774	78.2	CUT,Homeobox
Runt	452	9	443	590	76.6	Runt
AP2	7454	176	7278	10098	73.8	AP2
GCM	252	11	241	343	73.5	GCM
IRF	566	25	541	775	73.0	IRF
SMAD	1189	23	1166	1648	72.1	MH1
Forkhead	4844	115	4729	7008	69.1	Forkhead
Rel	697	27	670	1013	68.8	RHD_DNA_bind
CxxC	774	19	755	1137	68.1	zf-CXXC
Nuclear receptor	6662	160	6502	9797	68.0	zf-C4
DM	850	31	819	1264	67.2	DM
SBP	910	21	889	1369	66.5	SBP
Unknown	151	151	0	229	65.9	UNKNOWN
HSF	2766	29	2737	4282	64.6	HSF_DNA-bind
MADS box	4275	121	4154	6999	61.1	SRF-TF
CCCH ZF	3	3	0	5	60.0	zf-CCCH
EIN3	252	6	246	451	55.9	EIN3
CBF/NF-Y	677	3	674	1226	55.2	CBFB_NFYA
Prospero	229	2	227	422	54.3	HPD
VHR1	38	3	35	74	51.4	Vhr1
GATA	3347	78	3269	6553	51.1	GATA
TBP	808	3	805	1585	51.0	TBP
Myb	13046	232	12814	26299	49.6	Myb_DNA-binding
Sox	5540	88	5452	11290	49.1	HMG_box
AP-2	454	9	445	928	48.9	TF_AP-2
Leafy	72	1	71	150	48.0	FLO_LFY
LOB	1266	11	1255	2658	47.6	DUF260
STAT	356	15	341	751	47.4	STAT_bind
T-box	1334	43	1291	2855	46.7	T-box
NAC/NAM	3547	74	3473	7618	46.6	NAM
Paired box	728	16	712	1630	44.7	PAX
bZIP	8230	278	7952	19511	42.2	bZIP_1
Grainyhead	411	10	401	975	42.2	CP2
p53	182	6	176	432	42.1	P53
GTF2I-like	101	2	99	240	42.1	GTF2I
bHLH	10721	283	10438	25639	41.8	HLH
SAND	336	22	314	814	41.3	SAND
CSL	223	4	219	551	40.5	LAG1-DNAbind
CG-1	272	5	267	679	40.1	CG-1
STE	56	1	55	141	39.7	STE
CSD	653	8	645	1738	37.6	CSD
S1FA	75	1	74	214	35.0	S1FA
RWP-RK	509	3	506	1474	34.5	RWP-RK
ARID/BRIGHT	930	21	909	2749	33.8	ARID
APSES	799	12	787	2421	33.0	KilA-N
WRC	372	3	369	1167	31.9	WRC
TEA	257	11	246	820	31.3	TEA
B3	1565	17	1548	6172	25.4	B3
C2H2 ZF	19715	910	18805	81123	24.3	zf-C2H2
POU	34	1	33	164	20.7	Pou
MADF	995	54	941	5173	19.2	MADF_DNA_bdg
Zinc cluster	5938	219	5719	35092	16.9	Zn_clus
Ndt80/PhoG	128	5	123	777	16.5	NDT80_PhoG
Copper fist	84	4	80	542	15.5	Copper-fist
Pipsqueak	318	19	299	2169	14.7	HTH_psq
BBR	60	3	57	442	13.6	GAGA_bind
GCR1	65	4	61	503	12.9	GCR1_C
CENPB	250	8	242	2024	12.4	CENP-B_N
Storekeeper	121	8	113	1042	11.6	DUF573
MBD	201	6	195	2071	9.7	MBD
Brinker	43	5	38	469	9.2	BrkDBD
CUT	29	1	28	364	8.0	CUT
C2HC ZF	65	1	64	869	7.5	zf-C2HC
Rap1	9	3	6	126	7.1	Rap1-DNA-bind
AFT	10	2	8	148	6.8	AFT
THAP finger	192	11	181	2984	6.4	THAP
MATalpha_HMGbox	9	1	8	152	5.9	MATalpha_HMGbox
IBD	6	3	3	135	4.4	IBD
ICP4	1	0	1	24	4.2	Herpes_ICP4_N
BED ZF	119	5	114	4572	2.6	zf-BED
PLATZ	26	1	25	1044	2.5	PLATZ
ABF1	3	2	1	146	2.1	BAF1_ABF1
NFX	15	2	13	821	1.8	zf-NF-X1
FAR1	59	2	57	3368	1.8	FAR1
mTERF	41	2	39	3626	1.1	mTERF
GRAS	29	1	28	3585	0.8	GRAS
Sigma 70	0	0	0	594	0.0	Sigma70_r2
Whirly	0	0	0	198	0.0	Whirly
MADF+Myb	0	0	0	17	0.0	MADF_DNA_bdg,Myb_DNA-binding
FLYWCH	0	0	0	2009	0.0	FLYWCH